Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species Solanum microdontum and Solanum pampasense.
Identifieur interne : 000249 ( Main/Exploration ); précédent : 000248; suivant : 000250Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species Solanum microdontum and Solanum pampasense.
Auteurs : Fergus Meade [Irlande (pays)] ; Ronald Hutten [Pays-Bas] ; Silke Wagener [Allemagne] ; Vanessa Prigge [Allemagne] ; Emmet Dalton [Pays-Bas] ; Hanne Grethe Kirk [Danemark] ; Denis Griffin [Irlande (pays)] ; Dan Milbourne [Irlande (pays)]Source :
- Genes [ 2073-4425 ] ; 2020.
Abstract
Wild potato species continue to be a rich source of genes for resistance to late blight in potato breeding. Whilst many dominant resistance genes from such sources have been characterised and used in breeding, quantitative resistance also offers potential for breeding when the loci underlying the resistance can be identified and tagged using molecular markers. In this study, F1 populations were created from crosses between blight susceptible parents and lines exhibiting strong partial resistance to late blight derived from the South American wild species Solanum microdontum and Solanum pampasense. Both populations exhibited continuous variation for resistance to late blight over multiple field-testing seasons. High density genetic maps were created using single nucleotide polymorphism (SNP) markers, enabling mapping of quantitative trait loci (QTLs) for late blight resistance that were consistently expressed over multiple years in both populations. In the population created with the S. microdontum source, QTLs for resistance consistently expressed over three years and explaining a large portion (21-47%) of the phenotypic variation were found on chromosomes 5 and 6, and a further resistance QTL on chromosome 10, apparently related to foliar development, was discovered in 2016 only. In the population created with the S. pampasense source, QTLs for resistance were found in over two years on chromosomes 11 and 12. For all loci detected consistently across years, the QTLs span known R gene clusters and so they likely represent novel late blight resistance genes. Simple genetic models following the effect of the presence or absence of SNPs associated with consistently effective loci in both populations demonstrated that marker assisted selection (MAS) strategies to introgress and pyramid these loci have potential in resistance breeding strategies.
DOI: 10.3390/genes11070732
PubMed: 32630103
PubMed Central: PMC7396981
Affiliations:
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first="Fergus" last="Meade">Fergus Meade</name><affiliation wicri:level="1"><nlm:affiliation>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12, Ireland.</nlm:affiliation><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12</wicri:regionArea><wicri:noRegion>R93 XE12</wicri:noRegion></affiliation></author><author><name sortKey="Hutten, Ronald" sort="Hutten, Ronald" uniqKey="Hutten R" first="Ronald" last="Hutten">Ronald Hutten</name><affiliation wicri:level="1"><nlm:affiliation>Wageningen University & Research (WUR), 6708 PB Wageningen, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Wageningen University & Research (WUR), 6708 PB Wageningen</wicri:regionArea><wicri:noRegion>6708 PB Wageningen</wicri:noRegion></affiliation></author><author><name sortKey="Wagener, Silke" sort="Wagener, Silke" uniqKey="Wagener S" first="Silke" last="Wagener">Silke Wagener</name><affiliation wicri:level="1"><nlm:affiliation>SaKa Pflanzenzucht GmbH & Co., 22761 Hamburg, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>SaKa Pflanzenzucht GmbH & Co., 22761 Hamburg</wicri:regionArea><wicri:noRegion>22761 Hamburg</wicri:noRegion><placeName><settlement type="city">Hambourg</settlement><region type="land" nuts="2">Hambourg</region></placeName></affiliation></author><author><name sortKey="Prigge, Vanessa" sort="Prigge, Vanessa" uniqKey="Prigge V" first="Vanessa" last="Prigge">Vanessa Prigge</name><affiliation wicri:level="1"><nlm:affiliation>SaKa Pflanzenzucht GmbH & Co., 22761 Hamburg, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>SaKa Pflanzenzucht GmbH & Co., 22761 Hamburg</wicri:regionArea><wicri:noRegion>22761 Hamburg</wicri:noRegion><placeName><settlement type="city">Hambourg</settlement><region type="land" nuts="2">Hambourg</region></placeName></affiliation></author><author><name sortKey="Dalton, Emmet" sort="Dalton, Emmet" uniqKey="Dalton E" first="Emmet" last="Dalton">Emmet Dalton</name><affiliation wicri:level="1"><nlm:affiliation>Aardevo, 8308 PB Nagele, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>Aardevo, 8308 PB Nagele</wicri:regionArea><wicri:noRegion>8308 PB Nagele</wicri:noRegion></affiliation></author><author><name sortKey="Kirk, Hanne Grethe" sort="Kirk, Hanne Grethe" uniqKey="Kirk H" first="Hanne Grethe" last="Kirk">Hanne Grethe Kirk</name><affiliation wicri:level="1"><nlm:affiliation>Danespo, 7323 Give, Denmark.</nlm:affiliation><country xml:lang="fr">Danemark</country><wicri:regionArea>Danespo, 7323 Give</wicri:regionArea><wicri:noRegion>7323 Give</wicri:noRegion></affiliation></author><author><name sortKey="Griffin, Denis" sort="Griffin, Denis" uniqKey="Griffin D" first="Denis" last="Griffin">Denis Griffin</name><affiliation wicri:level="1"><nlm:affiliation>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12, Ireland.</nlm:affiliation><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12</wicri:regionArea><wicri:noRegion>R93 XE12</wicri:noRegion></affiliation></author><author><name sortKey="Milbourne, Dan" sort="Milbourne, Dan" uniqKey="Milbourne D" first="Dan" last="Milbourne">Dan Milbourne</name><affiliation wicri:level="1"><nlm:affiliation>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12, Ireland.</nlm:affiliation><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12</wicri:regionArea><wicri:noRegion>R93 XE12</wicri:noRegion></affiliation></author></analytic><series><title level="j">Genes</title><idno type="eISSN">2073-4425</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Wild potato species continue to be a rich source of genes for resistance to late blight in potato breeding. Whilst many dominant resistance genes from such sources have been characterised and used in breeding, quantitative resistance also offers potential for breeding when the loci underlying the resistance can be identified and tagged using molecular markers. In this study, F<sub>1</sub> populations were created from crosses between blight susceptible parents and lines exhibiting strong partial resistance to late blight derived from the South American wild species <i>Solanum microdontum</i> and <i>Solanum pampasense</i>. Both populations exhibited continuous variation for resistance to late blight over multiple field-testing seasons. High density genetic maps were created using single nucleotide polymorphism (SNP) markers, enabling mapping of quantitative trait loci (QTLs) for late blight resistance that were consistently expressed over multiple years in both populations. In the population created with the <i>S. microdontum</i> source, QTLs for resistance consistently expressed over three years and explaining a large portion (21-47%) of the phenotypic variation were found on chromosomes 5 and 6, and a further resistance QTL on chromosome 10, apparently related to foliar development, was discovered in 2016 only. In the population created with the <i>S. pampasense</i> source, QTLs for resistance were found in over two years on chromosomes 11 and 12. For all loci detected consistently across years, the QTLs span known R gene clusters and so they likely represent novel late blight resistance genes. Simple genetic models following the effect of the presence or absence of SNPs associated with consistently effective loci in both populations demonstrated that marker assisted selection (MAS) strategies to introgress and pyramid these loci have potential in resistance breeding strategies.</div></front></TEI><pubmed><MedlineCitation Status="In-Data-Review" Owner="NLM"><PMID Version="1">32630103</PMID><DateRevised><Year>2020</Year><Month>08</Month><Day>06</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2073-4425</ISSN><JournalIssue CitedMedium="Internet"><Volume>11</Volume><Issue>7</Issue><PubDate><Year>2020</Year><Month>Jun</Month><Day>30</Day></PubDate></JournalIssue><Title>Genes</Title><ISOAbbreviation>Genes (Basel)</ISOAbbreviation></Journal><ArticleTitle>Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species <i>Solanum microdontum</i> and <i>Solanum pampasense</i>.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">E732</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.3390/genes11070732</ELocationID><Abstract><AbstractText>Wild potato species continue to be a rich source of genes for resistance to late blight in potato breeding. Whilst many dominant resistance genes from such sources have been characterised and used in breeding, quantitative resistance also offers potential for breeding when the loci underlying the resistance can be identified and tagged using molecular markers. In this study, F<sub>1</sub> populations were created from crosses between blight susceptible parents and lines exhibiting strong partial resistance to late blight derived from the South American wild species <i>Solanum microdontum</i> and <i>Solanum pampasense</i>. Both populations exhibited continuous variation for resistance to late blight over multiple field-testing seasons. High density genetic maps were created using single nucleotide polymorphism (SNP) markers, enabling mapping of quantitative trait loci (QTLs) for late blight resistance that were consistently expressed over multiple years in both populations. In the population created with the <i>S. microdontum</i> source, QTLs for resistance consistently expressed over three years and explaining a large portion (21-47%) of the phenotypic variation were found on chromosomes 5 and 6, and a further resistance QTL on chromosome 10, apparently related to foliar development, was discovered in 2016 only. In the population created with the <i>S. pampasense</i> source, QTLs for resistance were found in over two years on chromosomes 11 and 12. For all loci detected consistently across years, the QTLs span known R gene clusters and so they likely represent novel late blight resistance genes. Simple genetic models following the effect of the presence or absence of SNPs associated with consistently effective loci in both populations demonstrated that marker assisted selection (MAS) strategies to introgress and pyramid these loci have potential in resistance breeding strategies.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Meade</LastName><ForeName>Fergus</ForeName><Initials>F</Initials><Identifier Source="ORCID">0000-0001-9242-3622</Identifier><AffiliationInfo><Affiliation>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12, Ireland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hutten</LastName><ForeName>Ronald</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Wageningen University & Research (WUR), 6708 PB Wageningen, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wagener</LastName><ForeName>Silke</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>SaKa Pflanzenzucht GmbH & Co., 22761 Hamburg, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prigge</LastName><ForeName>Vanessa</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>SaKa Pflanzenzucht GmbH & Co., 22761 Hamburg, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dalton</LastName><ForeName>Emmet</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Aardevo, 8308 PB Nagele, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kirk</LastName><ForeName>Hanne Grethe</ForeName><Initials>HG</Initials><AffiliationInfo><Affiliation>Danespo, 7323 Give, Denmark.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Griffin</LastName><ForeName>Denis</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12, Ireland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Milbourne</LastName><ForeName>Dan</ForeName><Initials>D</Initials><Identifier Source="ORCID">0000-0002-8323-6195</Identifier><AffiliationInfo><Affiliation>Teagasc, Crop Science Department, Oak Park, Carlow, R93 XE12, Ireland.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>14/S/819</GrantID><Agency>Department of Agriculture, Food and the Marine, Ireland</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>06</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Genes (Basel)</MedlineTA><NlmUniqueID>101551097</NlmUniqueID><ISSNLinking>2073-4425</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Phytophthora infestans</Keyword><Keyword MajorTopicYN="N">QTL</Keyword><Keyword MajorTopicYN="N">breeding</Keyword><Keyword MajorTopicYN="N">late blight</Keyword><Keyword MajorTopicYN="N">marker-assisted selection</Keyword><Keyword MajorTopicYN="N">potato</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>04</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>06</Month><Day>09</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>06</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>7</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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|texte= Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species Solanum microdontum and Solanum pampasense.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:32630103" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PhytophthoraV1
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